miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|162324802|gb|ES591240.1|ES591240 GGGAAATATTAGAACAAGTTTTCGGTCCGGGATTCCCGGGATCGCCAAAAAGCTTCTGCAGCATTCTCCCTCCCTCCCTC
CCTCCCTCCATCATCTCCGAAGCAAGGCGAAGAAGACGAAGGAAGACGACGATGATGGGCGCGTCCTTCGTCTCCACCGT
CCCTTCTCTGCTCCCGCTTCAAGCTCAAGTCGCTCCTCCTTCTTCTTCCACCTCGTCTTCCGCCGCCTCCGTCAGGCCCC
CCGCCGCTCGTCCCGTTGCGGTTCGCTGCAAGACGGAGAACGGCTTCGCCGATGGCGGCGAGGAGTTGAGCCGACGAGAC
GTTCTTAAACTCGTCGGCGCTAGCGTCGGCATTGAACTGATGGCGAGCTCTGGATCATTCGTTGAATCGGCTCGTGCTGC
TGATTTGATTCAACGCCGGCAGCGTTCCGAGTTTCTTTCAAATGTCAGGGGCACCTTTTTCACGGCTATAAAGGGAAATC
CAGATCTCATCCCATCTTTACTGACGTTGGCATTAAATGATGCTATGACTTATGACAAGGCCTCAAAGTCTGGAGGCCCA
AATGGATCCATAAGGTTCAGCTCAGAGATTAGCAGACCCGAGAATAAGGGCCTTTCAGCTGCCATGAACTTATTGGAGGA
AGCTAAGAAGGAAATAGATTCATATTCCAAGGGCGGACCCATATCCTATGCAGATCTTATACAGTATGCAGCGCAGAGTG
CACTCAAGGCTACCTTTTCAGCTTCA




Most similar to sp|Q9THX6|TL29_SOLLC

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9THX6|TL29_SOLLC Thylakoid lumenal 29 kDa protein,
           chloroplastic OS=Solanum lycopersicum GN=CLEB3J9 PE=3
           SV=1
          Length = 345

 Score =  214 bits (545), Expect = 5e-55
 Identities = 108/149 (72%), Positives = 130/149 (87%)
 Frame = +3

Query: 300 EELSRRDVLKLVGASVGIELMASSGSFVESARAADLIQRRQRSEFLSNVRGTFFTAIKGN 479
           +   RRD+L+ VGA+VG++L+A S +F+E A AADLIQRRQRS+F S ++ T + AIK N
Sbjct: 46  DRFHRRDILQSVGAAVGMDLIARSSAFIEVANAADLIQRRQRSDFQSKIKLTLYDAIKAN 105

Query: 480 PDLIPSLLTLALNDAMTYDKASKSGGPNGSIRFSSEISRPENKGLSAAMNLLEEAKKEID 659
           PD+IPSLLTLALNDA+TYDKA+K+GGPNGSIRFSSEISRPENKGL AA+NLLEE+KK ID
Sbjct: 106 PDIIPSLLTLALNDAITYDKATKTGGPNGSIRFSSEISRPENKGLDAALNLLEESKKVID 165

Query: 660 SYSKGGPISYADLIQYAAQSALKATFSAS 746
             SKGGPISYADLIQ+AAQSA+K+TF AS
Sbjct: 166 LDSKGGPISYADLIQFAAQSAVKSTFIAS 194